Recent Advances in the Biodiversity, Biotechnology, and Biomedicine of Fungi

A special issue of Journal of Fungi (ISSN 2309-608X). This special issue belongs to the section "Fungal Evolution, Biodiversity and Systematics".

Deadline for manuscript submissions: 1 May 2024 | Viewed by 7276

Special Issue Editors

State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Guiyang 550025, China
Interests: medicinal mushroom; fungi diversity; taxonomy; fermentation engineering; natural products chemistry
College of Food Engineering & Biotechnology, Tianjin University of Science and Technology, Tianjin, China
Interests: the structures and functions of the complex carbohydrates in foods; to determine the role of carbohydrates in growth and development; host-pathogen interactions; disease processes
School of Pharmaceutical Sciences, South-Central University for Nationalities, Wuhan, China
Interests: natural product bioactivity; fungal natural products
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Special Issue Information

Dear Colleagues,

Fungi are ubiquitous, extremely diverse groups of micro- and macro-organisms with a wide range of phylogenetic and functional diversity. Approximately two–five million species of fungi play crucial roles as endophytes, pathogens, and saprobes in ecosystems and have great economic importance on account of both their beneficial and adverse effects. However, the current estimate of fungal diversity is highly uncertain. A polyphasic approach based on ecology, morphology, and molecular data-based methodologies is strongly recommended to precisely identify fungal species in the modern era.

Fungi have enormous chemical and structural diversity, which is incomparable to any synthetic library. Medicinal mushrooms, in particular, have enabled the development of critical pharmaceutical chemistry active substances and are significant tools for improving human and animal health, nutrition, and functionality. Hence, commercial mushroom production has been established throughout the world to supply the gradually growing demand for mushrooms as natural medicines. Moreover, cultivators have often tried to grow mushrooms by developing substrates, methods, processes, and factors to obtain high yield and quality.

Due to the widespread demand for and high value placed on these mushrooms, a wide variety of commercial products have been developed as effective food and drug supplements. However, it has often been questioned whether mushrooms are strictly a nutritional supplement for health or can also be a useful medication for therapeutic purposes. The effectiveness of mushrooms in clinical treatments should therefore be supported by more biomedical research and their true impact on human health should be assessed with more consistent clinical evaluations so that the viability of using biologically active extracts of mushroom species in alternative treatments can be established. Hence, fungal taxonomy, fungal bioresources, natural product chemistry, mushroom cultivation, food, and medicinal products will be the focus of this Special Issue.

Prof. Dr. Ting-Chi Wen
Prof. Dr. Zhenyuan Zhu
Prof. Dr. Tao Feng
Guest Editors

Manuscript Submission Information

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Keywords

  • ascomycetes
  • basidiomycetes
  • new taxa
  • mushroom cultivation
  • secondary metabolites
  • food and medicinal usage

Published Papers (8 papers)

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Research

18 pages, 7154 KiB  
Article
Three New Species of Russulaceae (Russulales, Basidiomycota) from Southern China
J. Fungi 2024, 10(1), 70; https://doi.org/10.3390/jof10010070 (registering DOI) - 15 Jan 2024
Abstract
The characterization of natural fungal diversity impacts our understanding of ecological and evolutionary processes and can lead to novel bioproduct discovery. Russula and Lactarius, both in the order Russulales, represent two large genera of ectomycorrhizal fungi that include edible as well as [...] Read more.
The characterization of natural fungal diversity impacts our understanding of ecological and evolutionary processes and can lead to novel bioproduct discovery. Russula and Lactarius, both in the order Russulales, represent two large genera of ectomycorrhizal fungi that include edible as well as toxic varieties. Based on morphological and phylogenetic analyses, including nucleotide sequences of the internal transcribed spacer (ITS), the 28S large subunit of ribosomal RNA (LSU), the second largest subunit of RNA polymerase II (RPB2), the ribosomal mitochondrial small subunit (mtSSU), and the translation elongation factor 1-α (TEF1-α) gene sequences, we here describe and illustrate two new species of Russula and one new species of Lactarius from southern China. These three new species are: R. junzifengensis (R. subsect. Virescentinae), R. zonatus (R. subsect. Crassotunicatae), and L. jianyangensis (L. subsect. Zonarii). Full article
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17 pages, 8109 KiB  
Article
Characterization of Terpenoids from the Ambrosia Beetle Symbiont and Laurel Wilt Pathogen Harringtonia lauricola
J. Fungi 2023, 9(12), 1175; https://doi.org/10.3390/jof9121175 - 07 Dec 2023
Viewed by 882
Abstract
Little is known concerning terpenoids produced by members of the fungal order Ophiostomales, with the member Harringtonia lauricola having the unique lifestyle of being a beetle symbiont but potentially devastating tree pathogen. Nine known terpenoids, including six labdane diterpenoids (16 [...] Read more.
Little is known concerning terpenoids produced by members of the fungal order Ophiostomales, with the member Harringtonia lauricola having the unique lifestyle of being a beetle symbiont but potentially devastating tree pathogen. Nine known terpenoids, including six labdane diterpenoids (16) and three hopane triterpenes (79), were isolated from H. lauricola ethyl acetate (EtOAc) extracts for the first time. All compounds were tested for various in vitro bioactivities. Six compounds, 2, 4, 5, 6, 7, and 9, are described functionally. Compounds 2, 4, 5, and 9 expressed potent antiproliferative activity against the MCF-7, HepG2 and A549 cancer cell lines, with half-maximal inhibitory concentrations (IC50s) ~12.54–26.06 μM. Antimicrobial activity bioassays revealed that compounds 4, 5, and 9 exhibited substantial effects against Gram-negative bacteria (Escherichia coli and Ralstonia solanacearum) with minimum inhibitory concentration (MIC) values between 3.13 and 12.50 μg/mL. Little activity was seen towards Gram-positive bacteria for any of the compounds, whereas compounds 2, 4, 7, and 9 expressed antifungal activities (Fusarium oxysporum) with MIC values ranging from 6.25 to 25.00 μg/mL. Compounds 4, 5, and 9 also displayed free radical scavenging abilities towards 2,2-diphenyl-1-picrylhydrazyl (DPPH) and superoxide (O2−), with IC50 values of compounds 2, 4, and 6 ~3.45–14.04 μg/mL and 22.87–53.31 μg/mL towards DPPH and O2−, respectively. These data provide an insight into the biopharmaceutical potential of terpenoids from this group of fungal insect symbionts and plant pathogens. Full article
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23 pages, 4977 KiB  
Article
Four New Species of Strobilomyces (Boletaceae, Boletales) from Hainan Island, Tropical China
J. Fungi 2023, 9(12), 1128; https://doi.org/10.3390/jof9121128 - 22 Nov 2023
Viewed by 695
Abstract
Strobilomyces, one of the most noticeable genera of Boletaceae (Boletales), is both ecologically and economically important. Although many studies have focused on Strobilomyces in China, the diversity still remains incompletely understood. In the present study, several collections of Strobilomyces from Hainan Island, [...] Read more.
Strobilomyces, one of the most noticeable genera of Boletaceae (Boletales), is both ecologically and economically important. Although many studies have focused on Strobilomyces in China, the diversity still remains incompletely understood. In the present study, several collections of Strobilomyces from Hainan Island, tropical China were studied based on morphology and molecular phylogenetic analyses. Four species are described as new, viz. S. baozhengii, S. conicus, S. hainanensis, and S. pachycystidiatus. Detailed descriptions, color photos of fresh basidiomata, and line drawings of microstructures of the four species are presented. Full article
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14 pages, 5225 KiB  
Article
Characterization of an α-Amylase from the Honeybee Chalk Brood Pathogen Ascosphaera apis
J. Fungi 2023, 9(11), 1082; https://doi.org/10.3390/jof9111082 - 05 Nov 2023
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Abstract
The insect pathogenic fungus, Ascosphaera apis, is the causative agent of honeybee chalk brood disease. Amylases are secreted by many plant pathogenic fungi to access host nutrients through the metabolism of starch, and the identification of new amylases can have important biotechnological [...] Read more.
The insect pathogenic fungus, Ascosphaera apis, is the causative agent of honeybee chalk brood disease. Amylases are secreted by many plant pathogenic fungi to access host nutrients through the metabolism of starch, and the identification of new amylases can have important biotechnological applications. Production of amylase by A. apis in submerged culture was optimized using the response surface method (RSM). Media composition was modeled using Box–Behnken design (BBD) at three levels of three variables, and the model was experimentally validated to predict amylase activity (R2 = 0.9528). Amylase activity was highest (45.28 ± 1.16 U/mL, mean ± SE) in media composed of 46 g/L maltose and1.51 g/L CaCl2 at a pH of 6.6, where total activity was ~11-fold greater as compared to standard basal media. The enzyme was purified to homogeneity with a 2.5% yield and 14-fold purification. The purified enzyme had a molecular weight of 75 kDa and was thermostable and active in a broad pH range (> 80% activity at a pH range of 7–10), with optimal activity at 55 °C and pH = 7.5. Kinetic analyses revealed a Km of 6.22 mmol/L and a Vmax of 4.21 μmol/mL·min using soluble starch as the substrate. Activity was significantly stimulated by Fe2+ and completely inhibited by Cu2+, Mn2+, and Ba2+ (10 mM). Ethanol and chloroform (10% v/v) also caused significant levels of inhibition. The purified amylase essentially exhibited activity only on hydrolyzed soluble starch, producing mainly glucose and maltose, indicating that it is an endo-amylase (α-amylase). Amylase activity peaked at 99.38 U/mL fermented in a 3.7 L-bioreactor (2.15-fold greater than what was observed in flask cultures). These data provide a strategy for optimizing the production of enzymes from fungi and provide insight into the α-amylase of A. apis. Full article
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15 pages, 7262 KiB  
Article
CRISPR/Cas9-Mediated Disruption of the pcz1 Gene and Its Impact on Growth, Development, and Penicillin Production in Penicillium rubens
J. Fungi 2023, 9(10), 1010; https://doi.org/10.3390/jof9101010 - 13 Oct 2023
Cited by 1 | Viewed by 1016
Abstract
Penicillium rubens is a filamentous fungus of great biotechnological importance due to its role as an industrial producer of the antibiotic penicillin. However, despite its significance, our understanding of the regulatory mechanisms governing biological processes in this fungus is still limited. In fungi, [...] Read more.
Penicillium rubens is a filamentous fungus of great biotechnological importance due to its role as an industrial producer of the antibiotic penicillin. However, despite its significance, our understanding of the regulatory mechanisms governing biological processes in this fungus is still limited. In fungi, zinc finger proteins containing a Zn(II)2Cys6 domain are particularly interesting regulators. Although the P. rubens genome harbors many genes encoding proteins with this domain, only two of them have been investigated thus far. In this study, we employed CRISPR-Cas9 technology to disrupt the pcz1 gene, which encodes a Zn(II)2Cys6 protein in P. rubens. The disruption of pcz1 resulted in a decrease in the production of penicillin in P. rubens. This decrease in penicillin production was accompanied by the downregulation of the expression of pcbAB, pcbC and penDE genes, which form the biosynthetic gene cluster responsible for penicillin production. Moreover, the disruption of pcz1 also impacts on asexual development, leading to decreased growth and conidiation, as well as enhanced conidial germination. Collectively, our results indicate that pcz1 acts as a positive regulator of penicillin production, growth, and conidiation, while functioning as a negative regulator of conidial germination in P. rubens. To the best of our knowledge, this is the first report involving a gene encoding a Zn(II)2Cys6 protein in the regulation of penicillin biosynthesis in P. rubens. Full article
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20 pages, 7486 KiB  
Article
Regulation of Intracellular Reactive Oxygen Species Levels after the Development of Phallus rubrovolvatus Rot Disease Due to Trichoderma koningii Mycoparasitism
J. Fungi 2023, 9(5), 525; https://doi.org/10.3390/jof9050525 - 28 Apr 2023
Cited by 1 | Viewed by 1042
Abstract
Phallus rubrovolvatus is a unique mushroom used for medicinal and dietary purposes in China. In recent years, however, the rot disease of P. rubrovolvatus has seriously affected its yield and quality, becoming an economically important threat. In this study, samples of symptomatic tissues [...] Read more.
Phallus rubrovolvatus is a unique mushroom used for medicinal and dietary purposes in China. In recent years, however, the rot disease of P. rubrovolvatus has seriously affected its yield and quality, becoming an economically important threat. In this study, samples of symptomatic tissues were collected, isolated, and identified from five major P. rubrovolvatus production regions in Guizhou Province, China. Based on combined analyses of phylogenies (ITS and EF1-α), morphological characteristics and Koch’s postulates, Trichoderma koningiopsis and Trichoderma koningii were identified as the pathogenic fungal species. Among these, T. koningii exhibited stronger pathogenicity than the other strains; thus, T. koningii was used as the test strain in the follow-up experiments. Upon co-culturing T. koningii with P. rubrovolvatus, the hyphae of the two species were intertwined, and the color of the P. rubrovolvatus hyphae changed from white to red. Moreover, T. koningii hyphae were wrapped around P. rubrovolvatus hyphae, leading to their shortening and convolution and ultimately inhibiting their growth due to wrinkling; T. koningii penetrated the entire basidiocarp tissue of P. rubrovolvatus, causing serious damage to the host basidiocarp cells. Further analyses revealed that T. koningii infection resulted in the swelling of basidiocarps and significantly enhanced the activity of defense-related enzymes, such as malondialdehyde, manganese peroxidase, and polyphenol oxidase. These findings offer theoretical support for further research on the infection mechanisms of pathogenic fungi and the prevention of diseases caused by them. Full article
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11 pages, 2611 KiB  
Article
Sesquiterpenes from the Fungus Antrodiella albocinnamomea with Cytotoxicity and Antibacterial Activity
J. Fungi 2023, 9(5), 521; https://doi.org/10.3390/jof9050521 - 28 Apr 2023
Viewed by 851
Abstract
Eight new sesquiterpenes, namely, albocinnamins A−H (18), along with two known ones (9 and 10), have been isolated from the fungus Antrodiella albocinnamomea. Compound 1 possesses a new backbone that might be derived from cadinane-type sesquiterpene. [...] Read more.
Eight new sesquiterpenes, namely, albocinnamins A−H (18), along with two known ones (9 and 10), have been isolated from the fungus Antrodiella albocinnamomea. Compound 1 possesses a new backbone that might be derived from cadinane-type sesquiterpene. Structures of the new compounds were elucidated by detailed spectroscopic data analysis, single-crystal X-ray diffraction, and ECD calculations. Compounds 1a and 1b showed cytotoxicity against SW480 and MCF-7 cells, with IC50 values ranging from 19.3 to 33.3 μM, while compound 2 displayed cytotoxicity against the HL-60 cell with an IC50 value of 12.3 μM. In addition, compounds 5 and 6 exhibited antibacterial activity against Staphylococcus aureus with MIC values of 64 and 64 µg/mL, respectively. Full article
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10 pages, 1375 KiB  
Article
Cytochalasans from the Endophytic Fungus Aspergillus sp. LE2: Their Structures, Antibacterial and NO Production Inhibitory Activities
J. Fungi 2023, 9(3), 374; https://doi.org/10.3390/jof9030374 - 19 Mar 2023
Viewed by 882
Abstract
Six new cytochalasans—namely, aspergicytochalasins A–F (16)—together with five known analogs were isolated and characterized from the endophytic fungus Aspergillus sp. from the medicinal plant Lonicera japonica. The structures of the new compounds were established by NMR and MS [...] Read more.
Six new cytochalasans—namely, aspergicytochalasins A–F (16)—together with five known analogs were isolated and characterized from the endophytic fungus Aspergillus sp. from the medicinal plant Lonicera japonica. The structures of the new compounds were established by NMR and MS methods as well as single crystal X-ray diffractions. Compounds 3 and 4 showed weak antibacterial activities to Staphylococcus aureus, with MIC values of 128 and 64 μg/mL, respectively. Compounds 1, 3, 5 and 6 showed inhibitory activities on NO production, with IC50 values less than 40 μM. Full article
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